During pain's attack on konoha, fans witnessed him destroying all six of pain's bodies in their fight. Jiraiya as a sensor type would have been able to smell out the real nagato (pain) and end the fight early. So no, naruto did not kill pain in the end.
5 Characters Onoki Could Defeat (& 5 He'd Lose Against) This Would Devastate Most Of Nagato's Paths (Including His Ability To Resurrect Others) And Force Him To Fight Defensively, Using His Flight To Survive.
Orochimaru was a sannin member, just like jiraiya and tsunade. Because of this, his real body stays frail and ill, hidden somewhere else, while his six paths acted as his bodies. The deva path is the strongest among the six paths of pain.
No, Naruto Does Not Actually Kill Kakuzu In Episode 89 Of The Shippuden Anime, “The Price Of Power”.
When naruto's fight with pain reaches it's peak, pain uses one of the sage of six paths move called chibaku tensei and to overcome the heavenly body that traps him, naruto while in 6 tails form is tempted by kyubi who offers him complete power of the 9 tails in exchange for ripping apart the seal and naruto does that. However, their position in the series didn't make them bulletproof. Jiraiya wanted to end the ninja wars, unnecessary killings, and death by ending the cycle of hatred and vengeance.
So No, Naruto Did Not Kill Pain In The End.
He traveled the world trying to find the solution and meaning behind this cycle. Jiraiya was able to defeat 3 of the paths of pain (arguably the weakest of the six), when he used pa and ma's genjutsu. Here's the origin and use of nagato's six paths of pain.
When Compared To Pain, He Was Much Weaker As He Struggled To Fight Naruto In His Four Tails Cloak, While Pain Was Able To Fight And.
Despite all of this naruto chose not to kill pain so that he can break the cycle of hatred. * naruto had katsuyu with him, who was constantly feeding intel to him about the pains * naruto was able to catch the asura. The answers are actually a multitude of reasons which helped him close the gap between him and pain.
The Six Paths Of Pain Was A Jutsu Used By Nagato And Served As His Representation In Akatsuki.it Allowed Nagato To Control Six Separated Bodies At The Same Time As If They Were His Own.
Several toad summons who are very powerful were needed to get rid of the animal path summons during naruto’s battle against pain. He was just as strong as naruto uzumaki himself, if not stronger. Pein will always be physically inferior to nagato (without the crippling device used to control them, obviously) but by making them a collective unit.